Visceral leishmaniasis is caused by the protozoan parasites Leishmania donovani and Leishmania infantum and is a potentially fatal disease in endemic areas around the world. During the infectious cycle, Leishmania alternate between the insect promastigote stage and the vertebrate aflagellate amastigote stage that proliferates inside infected host macrophages provoking the pathology of the disease. This consortium uses a highly interdisciplinary approach to reveal Leishmania signaling molecules associated with amastigote virulence, with the major aim to exploit parasite-specific pathways for anti-leishmanial drug development. We use innovative drug screening concepts not applied previously on parasitic systems. We will utilize visual high-content screening to discover compounds capable to kill intracellular Leishmania amastigotes without deteriorating the host cell. This phenotype-based strategy relies on fluorescent parasites and macrophages as read-outs and will allow simultaneous assessment of anti-leishmanial activity and host cell toxicity under physiological conditions. We will apply a target-based strategy utilizing recombinant Leishmania protein kinases for inhibitor identification and structure-guided drug design. The identification of appropriate target kinases, with only limited homology to their mammalian counterparts will rely on (i) in silico analysis by applying novel bioinformatic tools developed by consortium members, and (ii) in vitro assay based on their phospho-transferase activity towards recombinant Leishmania phospho-proteins. The major objectives of this proposal are (i) to screen small molecule and peptide libraries for hit compounds with leishmanicidal activity using phenotype- and target-based strategies, (ii) to identify anti-parasitic lead compounds and assess their pharmacokinetic profiles using cell-culture and experimental infection models for leishmaniasis, and (iii) to initiate lead optimization by structure-based drug design.
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Problem:
Chemotherapy remains the most important element in the control of VL as there are currently no vaccines to prevent VL infection. All current treatments suffer from significant drawbacks, i.e. parenteral route of administration, length of treatment (21 to 28 days), toxicity, or/and cost which limits their utilization in disease endemic areas. In addition, the drugs currently in clinical development are either reformulations of earlier medicines, combination therapies or the result of therapeutic switching and therefore do not offer new alternatives to patients suffering from leishmaniasis. Despite some progress for VL in treatment options in India (but not East Africa), no ideal drugs are available that fulfill the major requirements for efficient anti-leishmanial therapy, including high efficacy, low toxicity, easy administration, low costs, and avoiding occurrence of drug resistant parasites. Novel concepts towards identification and optimization of drug leads are urgently needed to overcome the current situation and more efficiently combat and eventually eradicate this deadly disease.
Aim:
The FP7-LEISHDRUG consortium provides a unique platform that aims to
- develop therapeutic tools for neglected infectious diseases caused by Trypanosomatidae,
- set up and deploy an integrated multidisciplinary approach for the development of new drugs based on recent scientific advances in areas such as genomics and proteomics,
- strengthen capacity building of two ICPC countries (Tunisia and Uruguay) for understanding and control of these diseases through networking and training scientists from endemic areas at the post-doctoral and pre-doctoral levels,
- provide mutual benefits to develop and exploit targets and lead compounds applicable and affordable for use in disease endemic countries, the latter objective benefiting from the participation of one SME with commercial interest in anti-parasitic drug development.
Expected results:
The LEISHDRUG consortium will have a significant impact on the following three main areas:
- Establishing an international network of European and ICPC researchers to develop new strategies to combat leishmaniasis
The creation of the LEISHDRUG consortium will have an immediate impact on reinforcing European research on trypanosomatid control and on fostering European interactions with programs and partners in developing countries. Our proposal connects leading scientists from 5 European countries (France, Spain, UK, Italy, Germany), Israel, South Korea, and two ICPC countries, Uruguay and Tunisia. LEISHDRUG thus will provide an important platform to coordinate the currently rather fragmented and insulated research efforts in the area of anti-leishmanial drug development. In agreement with the Barcelona objectives of education, training and innovation, the consortium will promote exchange of personnel, material, and knowledge. This project will include training and scientific exchange activities to enhance the research capacity and transfer technologies among the partners, especially among young investigators from developing countries. These plans imply the mobility of graduate students, post-doctoral fellowships and staff members. By transferring scientific information and excellence to ICPC partners, the present project will provide important contributions to building capacities for basic research in bioinformatics, proteomics, imaging, and structure-based drug design. In particular, the project will strengthen capacities in bioinformatics at the Pasteur Institute in Tunis and will allow this partner to move into the field of in silico analysis of pathogens and disease vectors, and drug design. Moreover, the principal investigator at IPT, Dr. Alia Benkahla, brings in an important expertise in capacity building as she (i) has co-organized a series of scientific events on the African continent, (ii) is member of the executive committee of the African Society of Bioinformatics and Computational Biology (ASCBC), and (iii) has contacts with several WHO officers and members of the trypanosomatidae community. The consortium will take advantage of this situation and recruit talented PhD students and Post-Docs from ICPC for the project.
- Discovery of new classes of lead compounds for curing leishmaniasis
The major long-term impact of LEISHDRUG lies in the identification of lead compounds against Leishmania and related trypanosomatids. Translating results to clinical applications is our ultimate goal. Small molecule-based therapies are, and probably will remain, the most important interventions for leishmaniasis. Within this project we propose to identify drug targets that impact on parasite-specific signaling pathways and in particular on the key influence of protein kinases. The identification of new lead compounds for such targets could translate into powerful therapeutic agents with potential broad applicability to other trypanosomatid pathogens. Efficient treatment will dramatically improve public health in disease-endemic countries. Infections due to Trpanosomatidae account for 122 000 deaths per year and over 4 million Disability Adjusted Life Years (DALY) (http://www.who.int/tdr/diseases). Reducing the burden of disease will have important consequences for the reduction of poverty and the economic development of ICPCs. This may be further enhanced by manufacture and commercialization through ICPC partners of inhibitors identified by the consortium.
- Development of new technologies for studying Leishmania and other trypanosomatid parasites
We propose a highly innovative and multidisciplinary strategy for anti-leishmanial drug development that exploit advances in trypanosomatid genomics and uses bio-imaging, in silico biology, proteomics, peptide chemistry, and structure-based drug design. Conceivably, the application of these cutting edge technologies will significantly advance our understanding on the biology of trypanosmatid parasites, which is key element towards the development of new therapeutic approaches. The LEISHDRUG consortium will further contribute to the development of novel techniques with relevance to anti-microbial drug development, including imaging-based drug screening using intracellular parasites as readout for anti-microbial activity, and phosphoproteomic screens to identify novel drug targets and define inhibitory peptides. Recombinant parasites with modified protein kinase expression profiles or parasite-specific protein kinase inhibitors will be useful tools to study the role of protein phosphorylation (i) in regulation of parasite differentiation and virulence, (ii) in host immune subversion and physiopathology, and (iii) in the development of multi-drug resistance. Given the relative homology of Leishmania with other trypanosomatids, the results obtained by the consortium (protein kinase inhibitors, algorithms for screening, structural models, peptide libraries) will presumable be more broadly applicable to other trypanosomatids.
Potential applications:
Identification of novel lead compounds for anti-leishmanial therapy
Coordinator:
Partners:
David Andreu
Pompeu Fabra University,
Barcelona
E-mail:
david.andreu@upf.edu
Alia Benkahla
Institut Pasteur,
Groupe de Bioinformatique et Modlisation
13 place Pasteur BP74 1002 Tunis,
Tunisie
E-mail:
Alia.Benkahla@pasteur.rns.tn
Alejandro Buschiazzo
Institut Pasteur of Montevideo,
Unit of Protein Crystallography
Mataojo 2020 Montevideo 11400
Uruguay
E-mail:
alebus@pasteur.edu.uy
Simon Croft
London School of Hygiene & Tropical Medicine
Department of Infectious and Tropical Disease
Keppel Street London, WC1E 7HT,
United Kingdom
E-mail:
simon.croft@lshtm.ac.uk
Manuela Helmer-Citterich
University of Rome Tor Vergata Dept of Biology
Via della Ricerca Scientifica s.n.c 00133 Rome,
Italy
E-mail:
citterich@uniroma2.it
Conrad Kunick
Institut fr Pharmazeutische Chemie,
Technische Universitt Braunschweig
Beethovenstrae 55 38106 Braunschweig,
Germany
E-mail:
c.kunick@tu-bs.de
Junior Lucio-Freitas
Institut Pasteur Korea,
Systems Biology of Pathogens Group
39-1 Hawolgok-dong,
Seongbuk-gu Seoul,
136-791 Korea
E-mail:
junior@pasteur.or.kr
Laurent Meijer
CNRS Station biologique
Place G. Teissier BP 74
29682 Roscoff Cedex
E-mail:
meijer@sb-roscoff.fr
Genevive Milon
Institut Pasteur,
25 rue du dr Roux,
75015 Paris,
France
E-mail:
genevieve.milon@pasteur.fr
Cederic Notredame
Comparative Bioinformatiqucs Group - Bioinformatics and Comparative Programme
Centro de regulacio Genomica,
Dr; Aiguader,
88 08003 Barcelona,
Spain
E-mail:
cedric.notredame@crg.es
Iain Pemberton
Photeomix 34 rue Carnot,
93160 NOISY LE GRAND
E-mail:
ipemberton@photeomix.com
Luis Rivas
Centro de Investigaciones Biologicas
(CSIS) C/ Ramiro de Maeztu 9
28040 Madrid,
Spain
E-mail:
luis.rivas@cib.csic.es
Spencer Shorte
Institut Pasteur,
25 rue du dr Roux,
75015 Paris,
France
E-mail:
sshorte@pasteur.fr
Vanessa Yardley
London School of Hygiene & Tropical Medicine
Department of Infectious and Tropical Disease
Keppel Street London,
WC1E 7HT, United Kingdom
E-mail:
Vanessa.Yardley@lshtm.ac.uk
Dan Zilberstein
Faculty of Biology Technion-Israel Institute of Technology
Haifa 32000,
Israel
E-mail:
danz@techunix.technion.ac.il